STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cchcr1Si:dkeyp-20g2.1. (840 aa)    
Predicted Functional Partners:
tcf19
Transcription factor 19 (SC1), like.
  
   
 0.581
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
   
  
 0.560
ska1
Spindle and kinetochore associated complex subunit 1.
   
 
 0.542
vars1
Valine--tRNA ligase.
      
 0.539
pawr
PRKC, apoptosis, WT1, regulator.
      
 0.520
LOC101067579
Inhibitor of DNA binding 1, HLH protein.
      
 0.499
hook1
Calponin-homology (CH) domain-containing protein.
   
  
 0.492
LOC101064312
Uncharacterized protein.
  
     0.481
cars2
Cysteinyl-tRNA synthetase 2, mitochondrial.
      
 0.404
ice2
Interactor of little elongator complex ELL subunit 2.
   
  
 0.404
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.