LOC101076406 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101076406

Nuclear receptor subfamily 4, group A, member 1. (573 aa)

Predicted Functional Partners:

LOC101077057

0.902

mapk7

0.902

mmp9

0.574

ncor2

0.524

ncor1

0.524

LOC101077674

0.485

rpl9

0.447

LOC101077107

0.420

AKT2

0.415

LOC101065438

0.415

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKT2	LOC101076406	ENSTRUP00000021654	ENSTRUP00000039650	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Nuclear receptor subfamily 4, group A, member 1.	0.415
AKT2	LOC101077057	ENSTRUP00000021654	ENSTRUP00000031186	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.415
LOC101065438	LOC101076406	ENSTRUP00000026604	ENSTRUP00000039650	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Nuclear receptor subfamily 4, group A, member 1.	0.415
LOC101065438	LOC101077057	ENSTRUP00000026604	ENSTRUP00000031186	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.415
LOC101076406	AKT2	ENSTRUP00000039650	ENSTRUP00000021654	Nuclear receptor subfamily 4, group A, member 1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.415
LOC101076406	LOC101065438	ENSTRUP00000039650	ENSTRUP00000026604	Nuclear receptor subfamily 4, group A, member 1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.415
LOC101076406	LOC101077057	ENSTRUP00000039650	ENSTRUP00000031186	Nuclear receptor subfamily 4, group A, member 1.	Uncharacterized protein.	0.902
LOC101076406	LOC101077107	ENSTRUP00000039650	ENSTRUP00000060284	Nuclear receptor subfamily 4, group A, member 1.	Fragile X mental retardation, autosomal homolog 2.	0.420
LOC101076406	LOC101077674	ENSTRUP00000039650	ENSTRUP00000019341	Nuclear receptor subfamily 4, group A, member 1.	Selenoprotein J.	0.485
LOC101076406	mapk7	ENSTRUP00000039650	ENSTRUP00000052615	Nuclear receptor subfamily 4, group A, member 1.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.902
LOC101076406	mmp9	ENSTRUP00000039650	ENSTRUP00000001994	Nuclear receptor subfamily 4, group A, member 1.	Uncharacterized protein.	0.574
LOC101076406	ncor1	ENSTRUP00000039650	ENSTRUP00000076945	Nuclear receptor subfamily 4, group A, member 1.	Nuclear receptor corepressor 1.	0.524
LOC101076406	ncor2	ENSTRUP00000039650	ENSTRUP00000030818	Nuclear receptor subfamily 4, group A, member 1.	Nuclear receptor corepressor 2.	0.524
LOC101076406	rpl9	ENSTRUP00000039650	ENSTRUP00000057540	Nuclear receptor subfamily 4, group A, member 1.	Ribosomal protein L9.	0.447
LOC101077057	AKT2	ENSTRUP00000031186	ENSTRUP00000021654	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.415
LOC101077057	LOC101065438	ENSTRUP00000031186	ENSTRUP00000026604	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.415
LOC101077057	LOC101076406	ENSTRUP00000031186	ENSTRUP00000039650	Uncharacterized protein.	Nuclear receptor subfamily 4, group A, member 1.	0.902
LOC101077057	LOC101077674	ENSTRUP00000031186	ENSTRUP00000019341	Uncharacterized protein.	Selenoprotein J.	0.485
LOC101077057	mapk7	ENSTRUP00000031186	ENSTRUP00000052615	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.902
LOC101077057	ncor1	ENSTRUP00000031186	ENSTRUP00000076945	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.524