STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101076978BMERB domain-containing protein. (783 aa)    
Predicted Functional Partners:
LOC101064738
Uncharacterized protein.
    
 0.926
LOC101063247
RAB8A, member RAS oncogene family.
    
 0.926
rab13
RAB13, member RAS oncogene family.
    
 0.926
LOC101062021
Multiple EGF-like-domains 8.
    
 0.926
RAB8A
RAB8A, member RAS oncogene family.
    
 0.926
LOC101075286
Actinin, alpha 1.
    
0.916
ACTN4
Actinin alpha 4.
    
0.916
micall2
Mical-like 2a.
  
  
 
0.901
ELFN1
Extracellular leucine rich repeat and fibronectin type III domain containing 1.
    
 
 0.576
cask
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
  0.574
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.