STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raraRetinoic acid receptor alpha; Receptor for retinoic acid. Retinoic acid receptors bind as heterodimers to their target response elements in response to their ligands, all-trans or 9-cis retinoic acid, and regulate gene expression in various biological processes. The rar/rxr heterodimers bind to the retinoic acid response elements (RARE) composed of tandem 5'-AGGTCA-3' sites known as DR1-DR5 (By similarity); Belongs to the nuclear hormone receptor family. NR1 subfamily. (455 aa)    
Predicted Functional Partners:
rxra
Retinoid X receptor, alpha a.
   
0.673
ncor2
Nuclear receptor corepressor 2.
    
 0.639
ncor1
Nuclear receptor corepressor 1.
    
 0.639
LOC101064914
Retinoid x receptor, beta b.
   
0.610
LOC101079168
Uncharacterized protein.
   
0.610
RXRB
Uncharacterized protein.
   
0.610
LOC101077948
Nuclear receptor subfamily 1, group D, member 2b.
   
0.594
LOC445936
Nuclear receptor subfamily 1, group D, member 2a.
   
0.562
gprc5b
G protein-coupled receptor, class C, group 5, member Ba.
      
 0.531
greb1
Growth regulating estrogen receptor binding 1.
    
 0.498
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.