STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2V3M6_TAKRUPalmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (365 aa)    
Predicted Functional Partners:
ckap4
Uncharacterized protein.
   
 
 0.521
LOC105417830
Uncharacterized protein.
    
 
 0.509
CLSPN
Claspin.
   
 
 0.494
ska1
Spindle and kinetochore associated complex subunit 1.
   
 
 0.492
timeless
Timeless circadian clock.
   
 
 0.446
tipin
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
   
 
 0.433
LOC101067654
SKA2 domain-containing protein.
   
 
 0.433
LOC101067654-2
SKA2 domain-containing protein.
   
 
 0.433
SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.
    
 
 0.428
zranb3
Zinc finger, RAN-binding domain containing 3.
    
 
 0.428
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.