STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101066604TUB like protein 1b; Belongs to the TUB family. (351 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
   
 0.724
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.721
wdr19
WD repeat domain 19.
    
 0.710
wdr35
WD repeat-containing protein 35.
    
 0.672
H2RLT0_TAKRU
Tetratricopeptide repeat domain 21B.
    
 0.653
ENSTRUP00000077170
annotation not available
    
 0.653
gpr161
G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.
     
 0.582
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.487
LOC101067955
Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.
   
  0.479
spata7
Uncharacterized protein.
      
 0.478
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.