STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101066235Transcription factor Sox1b. (333 aa)    
Predicted Functional Partners:
LOC101074260
POU domain protein.
    
 0.725
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.550
sall4
Spalt-like transcription factor 4.
   
 0.467
Sox8a
Transcription factor Sox8a.
   
0.453
LOC101079931
Junction plakoglobin a.
    
 0.449
LOC101069214
Uncharacterized protein.
    
 0.449
LOC101062682
Uncharacterized protein.
    
 0.449
LOC101071476
RAB27B, member RAS oncogene family.
   
 
 0.448
six6
SIX homeobox 6a.
   
 
 0.424
RAB19
RAB19, member RAS oncogene family.
    
 
 0.413
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.