STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pitx1Homeobox protein. (333 aa)    
Predicted Functional Partners:
tbx4
T-box transcription factor 4.
   
 
 0.717
lrtm2
Leucine-rich repeats and transmembrane domains 2a.
   
 
 0.652
clcn7
Chloride channel protein.
      
 0.652
H2SAI0_TAKRU
Receptor-interacting serine-threonine kinase 2.
      
 0.614
acacb
Acetyl-CoA carboxylase beta.
      
 0.566
LOC101072461
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.566
LOC101072524
V-type proton ATPase subunit B, brain isoform.
      
 0.536
LOC101068385
Sorting nexin 16.
      
 0.528
LOC101068385-2
Sorting nexin-16.
      
 0.528
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.470
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.