STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf144aRBR-type E3 ubiquitin transferase. (295 aa)    
Predicted Functional Partners:
prkdc
Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.800
rps27a
Ribosomal protein S27a.
    
 0.741
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.727
ENSTRUP00000085001
annotation not available
   
 0.720
LOC101070351
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.681
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.605
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
      
 0.587
trappc12
Trafficking protein particle complex 12.
      
 0.556
birc6
Baculoviral IAP repeat containing 6.
    
 0.555
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.553
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.