STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101069326YME1-like 1b. (717 aa)    
Predicted Functional Partners:
ndufa13
NADH:ubiquinone oxidoreductase subunit A13.
   
   0.857
timmdc1
Uncharacterized protein.
   
   0.856
phb2
Prohibitin.
   
 0.783
phb
Prohibitin.
   
 0.781
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
  
  
 0.765
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.684
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.679
LOC101072736
RAB18B, member RAS oncogene family.
   
  
 0.673
stoml1
Stomatin (EPB72)-like 1.
  
 0.671
oma1
OMA1 zinc metallopeptidase.
  
 
 0.669
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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