COL26A1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

COL26A1

Collagen type XXVI alpha 1 chain. (378 aa)

Predicted Functional Partners:

serpinh1

0.732

H2T9T0_TAKRU

0.546

ENSTRUP00000083220

0.515

ENSTRUP00000081645

0.510

ENSTRUP00000084089

0.510

ENSTRUP00000077966

0.502

LOC101078322

0.475

LOC101061571

0.475

H2USN9_TAKRU

0.468

col28a1

0.460

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COL26A1	ENSTRUP00000077966	ENSTRUP00000050230	ENSTRUP00000077966	Collagen type XXVI alpha 1 chain.	annotation not available	0.502
COL26A1	ENSTRUP00000081645	ENSTRUP00000050230	ENSTRUP00000081645	Collagen type XXVI alpha 1 chain.	annotation not available	0.510
COL26A1	ENSTRUP00000083220	ENSTRUP00000050230	ENSTRUP00000083220	Collagen type XXVI alpha 1 chain.	Collagen alpha-1(IX) chain-like.	0.515
COL26A1	ENSTRUP00000084089	ENSTRUP00000050230	ENSTRUP00000084089	Collagen type XXVI alpha 1 chain.	Collagen alpha-4(IV) chain-like isoform X1.	0.510
COL26A1	H2T9T0_TAKRU	ENSTRUP00000050230	ENSTRUP00000021420	Collagen type XXVI alpha 1 chain.	Uncharacterized protein.	0.546
COL26A1	H2USN9_TAKRU	ENSTRUP00000050230	ENSTRUP00000073828	Collagen type XXVI alpha 1 chain.	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	0.468
COL26A1	LOC101061571	ENSTRUP00000050230	ENSTRUP00000077455	Collagen type XXVI alpha 1 chain.	Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.	0.475
COL26A1	LOC101078322	ENSTRUP00000050230	ENSTRUP00000061298	Collagen type XXVI alpha 1 chain.	Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.	0.475
COL26A1	col28a1	ENSTRUP00000050230	ENSTRUP00000083440	Collagen type XXVI alpha 1 chain.	BPTI/Kunitz inhibitor domain-containing protein.	0.460
COL26A1	serpinh1	ENSTRUP00000050230	ENSTRUP00000003570	Collagen type XXVI alpha 1 chain.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	0.732
ENSTRUP00000077966	COL26A1	ENSTRUP00000077966	ENSTRUP00000050230	annotation not available	Collagen type XXVI alpha 1 chain.	0.502
ENSTRUP00000077966	ENSTRUP00000084089	ENSTRUP00000077966	ENSTRUP00000084089	annotation not available	Collagen alpha-4(IV) chain-like isoform X1.	0.534
ENSTRUP00000077966	H2T9T0_TAKRU	ENSTRUP00000077966	ENSTRUP00000021420	annotation not available	Uncharacterized protein.	0.534
ENSTRUP00000081645	COL26A1	ENSTRUP00000081645	ENSTRUP00000050230	annotation not available	Collagen type XXVI alpha 1 chain.	0.510
ENSTRUP00000081645	ENSTRUP00000083220	ENSTRUP00000081645	ENSTRUP00000083220	annotation not available	Collagen alpha-1(IX) chain-like.	0.591
ENSTRUP00000081645	ENSTRUP00000084089	ENSTRUP00000081645	ENSTRUP00000084089	annotation not available	Collagen alpha-4(IV) chain-like isoform X1.	0.599
ENSTRUP00000081645	H2T9T0_TAKRU	ENSTRUP00000081645	ENSTRUP00000021420	annotation not available	Uncharacterized protein.	0.603
ENSTRUP00000081645	H2USN9_TAKRU	ENSTRUP00000081645	ENSTRUP00000073828	annotation not available	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	0.577
ENSTRUP00000083220	COL26A1	ENSTRUP00000083220	ENSTRUP00000050230	Collagen alpha-1(IX) chain-like.	Collagen type XXVI alpha 1 chain.	0.515
ENSTRUP00000083220	ENSTRUP00000081645	ENSTRUP00000083220	ENSTRUP00000081645	Collagen alpha-1(IX) chain-like.	annotation not available	0.591