STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrp10Low density lipoprotein receptor-related protein 10. (872 aa)    
Predicted Functional Partners:
LOC101077791
Uncharacterized protein.
    
 0.633
aplp1
Amyloid beta (A4) precursor-like protein 1.
    
 0.512
sacm1l
SAC1 like phosphatidylinositide phosphatase a.
    
 0.509
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.509
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.500
prkn
Ubiquitin-like domain-containing protein.
      
 0.497
agrn
Agrin.
    
 0.475
pcare
Uncharacterized protein.
  
     0.467
gab1
GRB2-associated binding protein 1.
  
  
 0.451
LOC101075320
Si:dkey-175m17.7.
  
 
  0.451
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.