ENSTRUP00000051171 protein (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSTRUP00000051171

Uncharacterized protein. (1379 aa)

Predicted Functional Partners:

itgb4

0.753

Col24a1

0.550

LOC101072045

0.539

LOC101064651

0.539

plod1

0.517

plod2

0.517

lamb3

0.511

serpinh1

0.506

ppib

0.505

LOC101062524

0.484

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Col24a1	ENSTRUP00000051171	ENSTRUP00000070873	ENSTRUP00000051171	Collagen type V/XI/XXIV/XXVII, alpha.	Uncharacterized protein.	0.550
Col24a1	LOC101062524	ENSTRUP00000070873	ENSTRUP00000027681	Collagen type V/XI/XXIV/XXVII, alpha.	Uncharacterized protein.	0.450
Col24a1	plod1	ENSTRUP00000070873	ENSTRUP00000064040	Collagen type V/XI/XXIV/XXVII, alpha.	Fe2OG dioxygenase domain-containing protein.	0.476
Col24a1	plod2	ENSTRUP00000070873	ENSTRUP00000078534	Collagen type V/XI/XXIV/XXVII, alpha.	Fe2OG dioxygenase domain-containing protein.	0.476
Col24a1	ppib	ENSTRUP00000070873	ENSTRUP00000052493	Collagen type V/XI/XXIV/XXVII, alpha.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.461
Col24a1	serpinh1	ENSTRUP00000070873	ENSTRUP00000003570	Collagen type V/XI/XXIV/XXVII, alpha.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	0.511
ENSTRUP00000051171	Col24a1	ENSTRUP00000051171	ENSTRUP00000070873	Uncharacterized protein.	Collagen type V/XI/XXIV/XXVII, alpha.	0.550
ENSTRUP00000051171	LOC101062524	ENSTRUP00000051171	ENSTRUP00000027681	Uncharacterized protein.	Uncharacterized protein.	0.484
ENSTRUP00000051171	LOC101064651	ENSTRUP00000051171	ENSTRUP00000071477	Uncharacterized protein.	Tetraspanin.	0.539
ENSTRUP00000051171	LOC101072045	ENSTRUP00000051171	ENSTRUP00000056303	Uncharacterized protein.	Tetraspanin.	0.539
ENSTRUP00000051171	itgb4	ENSTRUP00000051171	ENSTRUP00000014157	Uncharacterized protein.	Integrin beta.	0.753
ENSTRUP00000051171	lamb3	ENSTRUP00000051171	ENSTRUP00000082678	Uncharacterized protein.	Uncharacterized protein.	0.511
ENSTRUP00000051171	plod1	ENSTRUP00000051171	ENSTRUP00000064040	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.517
ENSTRUP00000051171	plod2	ENSTRUP00000051171	ENSTRUP00000078534	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.517
ENSTRUP00000051171	ppib	ENSTRUP00000051171	ENSTRUP00000052493	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.505
ENSTRUP00000051171	serpinh1	ENSTRUP00000051171	ENSTRUP00000003570	Uncharacterized protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	0.506
LOC101062524	Col24a1	ENSTRUP00000027681	ENSTRUP00000070873	Uncharacterized protein.	Collagen type V/XI/XXIV/XXVII, alpha.	0.450
LOC101062524	ENSTRUP00000051171	ENSTRUP00000027681	ENSTRUP00000051171	Uncharacterized protein.	Uncharacterized protein.	0.484
LOC101062524	itgb4	ENSTRUP00000027681	ENSTRUP00000014157	Uncharacterized protein.	Integrin beta.	0.714
LOC101062524	lamb3	ENSTRUP00000027681	ENSTRUP00000082678	Uncharacterized protein.	Uncharacterized protein.	0.418