STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hacl12-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family. (589 aa)    
Predicted Functional Partners:
pex5
Peroxisomal biogenesis factor 5.
 
  
 0.954
pex5l
Peroxisomal biogenesis factor 5-like a.
 
  
 0.954
LOC101075777
Malate synthase-like.
  
 
 0.937
cs
Citrate synthase; Belongs to the citrate synthase family.
    
 0.900
LOC101064586
Serine--pyruvate aminotransferase.
  
 
 0.897
adhfe1
Uncharacterized protein.
    
 0.894
hddc3
HD domain containing 3.
  
 
 0.846
bcat1
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.843
LOC101066192
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.843
LOC101069440
Uncharacterized protein.
  
 
 0.817
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.