STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a42Solute carrier family 25 member 42; Belongs to the mitochondrial carrier (TC 2.A.29) family. (326 aa)    
Predicted Functional Partners:
cenpt
Uncharacterized protein.
   
 0.906
rpl18
Ribosomal protein L18.
 
 
    0.899
tyms
Thymidylate synthetase.
  
 0.865
cenpn
Centromere protein N.
   
 0.840
cenpk
Centromere protein K.
   
 0.826
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
  
 0.806
cenpm
Proliferation associated nuclear element.
   
 0.790
cenpq
Uncharacterized protein.
   
 0.763
kremen1
Kringle containing transmembrane protein 1.
   
 0.749
wscd2
WSC domain containing 2.
   
 0.749
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.