STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hivep1Human immunodeficiency virus type I enhancer binding protein 1. (2647 aa)    
Predicted Functional Partners:
ankrd22
Ankyrin repeat domain 22.
    
 0.597
rora
RAR-related orphan receptor A, paralog a.
    
 
 0.568
LOC101076249
Protocadherin 8.
     
 0.475
PCDH8
Protocadherin 8.
     
 0.475
setbp1
SET binding protein 1.
  
 0.464
egr3
Early growth response 3.
      
 0.461
meis2
Meis homeobox 2a.
    
 0.448
scel
LIM zinc-binding domain-containing protein.
    
 
 0.447
thrap3
Thyroid hormone receptor associated protein 3b.
  
  0.429
fbxw11
F-box and WD repeat domain containing 11b.
    
  0.426
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.