STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105416362Solute carrier family 18 member 3a. (517 aa)    
Predicted Functional Partners:
LOC101076861
Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.
 
 
  
 0.732
LOC101061555
Choline O-acetyltransferase a; Belongs to the carnitine/choline acetyltransferase family.
 
 
  
 0.700
RIMS2
Regulating synaptic membrane exocytosis 2.
     
 0.669
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
     
 0.642
LOC101074598
Zgc:154046; Belongs to the carnitine/choline acetyltransferase family.
 
 
  
 0.596
cask
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
     
 0.590
H2SYV1_TAKRU
Carn_acyltransf domain-containing protein.
 
 
  
 0.579
ENSTRUP00000076224
annotation not available
   
 
 0.569
LOC101073763
V-SNARE coiled-coil homology domain-containing protein.
   
 
 0.569
H2UKU8_TAKRU
C2 domain-containing protein.
     
 0.562
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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