STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078205Uncharacterized protein. (644 aa)    
Predicted Functional Partners:
ift88
Intraflagellar transport 88 homolog.
    
 0.969
ift172
Uncharacterized protein.
   
 0.947
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.946
cluap1
Clusterin associated protein 1.
   
 0.945
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.943
Ift46
Intraflagellar transport protein 46 homolog isoform X1.
    
 0.934
TTC26
Intraflagellar transport protein 56 isoform X1.
  
 
 0.919
LOC101076242
Uncharacterized protein.
  
 
 0.919
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.908
ENSTRUP00000053515
Uncharacterized protein.
    
 0.908
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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