STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ufd1Ubiquitin recognition factor in ER associated degradation 1. (400 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.999
UBXN7
UBX domain protein 7.
   
 0.999
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.997
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.995
yod1
YOD1 deubiquitinase.
   
 
 0.991
plaa
Phospholipase A2-activating protein.
   
 
 0.981
FAAP100
Uncharacterized protein.
   
 0.974
derl2
Derlin-2/3.
   
 
 0.972
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.968
KATNAL2
Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.
   
 0.966
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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