STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnf1bHNF1 homeobox Ba. (568 aa)    
Predicted Functional Partners:
hnf1a
HNF1 homeobox a.
  
 
0.759
cdh17
Cadherin 17, LI cadherin (liver-intestine).
   
  
 0.577
ptf1a
Pancreas associated transcription factor 1a.
     
 0.552
LOC115247664
Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.
      
 0.531
LOC101071576
Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.
      
 0.531
irx3
Iroquois homeobox 3a.
    
 
 0.474
LOC101068345
Uncharacterized protein.
    
 
 0.464
LOC101073512
Paired box 2a.
   
 
 0.458
irx2
Iroquois homeobox 2a.
    
 
 0.446
pdx1
Pancreatic and duodenal homeobox 1.
   
  
 0.441
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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