STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX18SRY-box transcription factor 18. (561 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.679
lef1
Lymphoid enhancer-binding factor 1.
    
0.648
LOC101074260
POU domain protein.
    
 0.646
nr2f2
Nuclear receptor subfamily 2, group F, member 2.
   
 
 0.596
tcf7
Transcription factor 7.
    
0.590
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 
 0.571
vegfc
Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.
   
 
 0.553
ABHD1
Abhydrolase domain containing 1.
   
  
 0.552
ccbe1
Collagen and calcium binding EGF domains 1.
      
 0.497
LOC101079931
Junction plakoglobin a.
    
 0.488
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.