STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfxn5Sideroflexin 5b. (326 aa)    
Predicted Functional Partners:
tmed9
Transmembrane p24 trafficking protein 9.
      
 0.641
rab11fip2
RAB11 family interacting protein 2 (class I).
 
  
 
 0.614
b4galt7
Beta1,4-galactosyltransferase 7.
      
 0.570
LOC101076806
Canopy FGF signaling regulator 3.
      
 0.543
LOC101078052
Empty spiracles homeobox 3.
      
 0.486
LOC101067934
Uncharacterized protein.
    
 
 0.475
LOC101076918
RAB25, member RAS oncogene family b.
    
 
 0.475
LOC101073928
Uncharacterized protein.
    
 
 0.464
LOC101074373
Uncharacterized protein.
    
 
 0.464
rab11a
RAB11a, member RAS oncogene family.
    
 
 0.464
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.