STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115246522GTPase activating protein and VPS9 domains 1. (1491 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.872
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.776
rab21
Ras-related protein Rab-21.
   
 0.761
RAB17
RAB17, member RAS oncogene family.
    
 0.727
rab5c
RAB5C, member RAS oncogene family.
    
 0.727
LOC101069188
Uncharacterized protein.
    
 0.727
LOC101071138
RAB5A, member RAS oncogene family, a.
    
 0.727
LOC101072093
RAB5B, member RAS oncogene family.
    
 0.727
LOC101078239
RAB5A, member RAS oncogene family, b.
    
 0.727
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
   
 0.711
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.