asap1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

asap1

ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b. (1129 aa)

Predicted Functional Partners:

rab11fip3

0.617

peak1

0.603

exoc7

0.587

appl2

0.587

appl1

0.587

exoc5

0.572

grb2

0.532

vdac1

0.532

pde3b

0.531

pkd2

0.526

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
appl1	appl2	ENSTRUP00000085514	ENSTRUP00000050989	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.985
appl1	asap1	ENSTRUP00000085514	ENSTRUP00000059766	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	0.587
appl1	exoc5	ENSTRUP00000085514	ENSTRUP00000055321	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Exocyst complex component 5.	0.489
appl1	exoc7	ENSTRUP00000085514	ENSTRUP00000007244	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.449
appl1	rab11fip3	ENSTRUP00000085514	ENSTRUP00000083333	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	RAB11 family interacting protein 3 (class II).	0.449
appl2	appl1	ENSTRUP00000050989	ENSTRUP00000085514	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.985
appl2	asap1	ENSTRUP00000050989	ENSTRUP00000059766	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	0.587
appl2	exoc5	ENSTRUP00000050989	ENSTRUP00000055321	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Exocyst complex component 5.	0.489
appl2	exoc7	ENSTRUP00000050989	ENSTRUP00000007244	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.449
appl2	rab11fip3	ENSTRUP00000050989	ENSTRUP00000083333	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	RAB11 family interacting protein 3 (class II).	0.449
asap1	appl1	ENSTRUP00000059766	ENSTRUP00000085514	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.587
asap1	appl2	ENSTRUP00000059766	ENSTRUP00000050989	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.587
asap1	exoc5	ENSTRUP00000059766	ENSTRUP00000055321	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Exocyst complex component 5.	0.572
asap1	exoc7	ENSTRUP00000059766	ENSTRUP00000007244	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.587
asap1	grb2	ENSTRUP00000059766	ENSTRUP00000020659	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Growth factor receptor-bound protein 2b.	0.532
asap1	pde3b	ENSTRUP00000059766	ENSTRUP00000075459	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Phosphodiesterase.	0.531
asap1	peak1	ENSTRUP00000059766	ENSTRUP00000050972	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Pseudopodium-enriched atypical kinase 1.	0.603
asap1	pkd2	ENSTRUP00000059766	ENSTRUP00000029214	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Polycystic kidney disease 2.	0.526
asap1	rab11fip3	ENSTRUP00000059766	ENSTRUP00000083333	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	RAB11 family interacting protein 3 (class II).	0.617
asap1	vdac1	ENSTRUP00000059766	ENSTRUP00000069397	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.	Voltage-dependent anion channel 1.	0.532