STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scocShort coiled-coil protein isoform X1. (128 aa)    
Predicted Functional Partners:
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.842
fez1
Fasciculation and elongation protein zeta 1 (zygin I).
   
 
 0.731
LOC101072133
Si:ch211-57i17.1.
   
 
 0.726
LOC101066262
Si:dkey-288i20.2.
   
 
 0.726
arfrp1
ADP-ribosylation factor related protein 1.
      
 0.575
prpf38b
Uncharacterized protein.
      
 0.566
dlgap3
Discs, large (Drosophila) homolog-associated protein 3.
      
 0.566
LOC101076945
Uncharacterized protein.
      
 0.565
atp6v1d
ATPase H+ transporting V1 subunit D.
      
 0.489
LOC101072071
WW domain-containing protein.
      
 0.457
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.