STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101065898OTU deubiquitinase with linear linkage specificity. (695 aa)    
Predicted Functional Partners:
sharpin
SHANK-associated RH domain interacting protein.
    
 0.954
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.898
rps27a
Ribosomal protein S27a.
    
 0.893
LOC115247907
Si:dkey-181m9.8.
    
 0.877
LOC101068646
E3 ubiquitin-protein ligase RNF31-like.
    
 0.877
rnf31
Uncharacterized protein.
    
 0.877
LOC101065618
E3 ubiquitin-protein ligase RNF31-like isoform X1.
    
 0.877
SNX27
Sorting nexin 27.
    
 
 0.862
LOC101065676
Sorting nexin 27a.
    
 
 0.862
rbck1
RanBP-type and C3HC4-type zinc finger containing 1.
    
 0.803
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.