STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSTRUP00000063271LOW QUALITY PROTEIN: ATP-binding cassette sub-family F member 1-like. (462 aa)    
Predicted Functional Partners:
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.811
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.796
rpl35
Ribosomal protein L35.
   
 
 0.782
rps18
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.781
rpl9
Ribosomal protein L9.
  
 
 0.779
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.778
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.772
mrpl33
Mitochondrial ribosomal protein L33.
   
 
 0.766
Mrpl21
Uncharacterized protein.
  
   0.757
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.753
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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