STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062914Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (2914 aa)    
Predicted Functional Partners:
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 0.536
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.536
LOC101079931
Junction plakoglobin a.
    
 0.523
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.523
LOC101069214
Uncharacterized protein.
    
 0.523
LOC101062682
Uncharacterized protein.
    
 0.523
LOC101065727
Protocadherin-related 15b.
   
0.487
LOC101075306
Cadherin-related family member 5-like isoform X1.
   
0.487
LOC115252027
Cadherin-related family member 5-like.
   
0.487
LOC101065208
Usher syndrome 1C.
   
 
 0.469
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.