cetp protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cetp

Cholesteryl ester transfer protein. (502 aa)

Predicted Functional Partners:

apoA-IV4

0.717

apoa-iv3

0.717

H2RM54_TAKRU

0.697

ENSTRUP00000074430

0.697

LOC101066818

0.697

ENSTRUP00000077462

0.656

apoa-i

0.644

lcat

0.628

apoe2

0.588

ENSTRUP00000083202

0.566

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000074430	apoA-IV4	ENSTRUP00000074430	ENSTRUP00000002135	annotation not available	Apolipoprotein A-IV4.	0.836
ENSTRUP00000074430	apoa-i	ENSTRUP00000074430	ENSTRUP00000087291	annotation not available	Uncharacterized protein.	0.808
ENSTRUP00000074430	apoa-iv3	ENSTRUP00000074430	ENSTRUP00000004267	annotation not available	Uncharacterized protein.	0.836
ENSTRUP00000074430	apoe2	ENSTRUP00000074430	ENSTRUP00000074375	annotation not available	Apolipoprotein E2.	0.768
ENSTRUP00000074430	cetp	ENSTRUP00000074430	ENSTRUP00000070450	annotation not available	Cholesteryl ester transfer protein.	0.697
ENSTRUP00000074430	lcat	ENSTRUP00000074430	ENSTRUP00000082709	annotation not available	Lecithin-cholesterol acyltransferase.	0.422
ENSTRUP00000077462	apoA-IV4	ENSTRUP00000077462	ENSTRUP00000002135	annotation not available	Apolipoprotein A-IV4.	0.811
ENSTRUP00000077462	apoa-i	ENSTRUP00000077462	ENSTRUP00000087291	annotation not available	Uncharacterized protein.	0.798
ENSTRUP00000077462	apoa-iv3	ENSTRUP00000077462	ENSTRUP00000004267	annotation not available	Uncharacterized protein.	0.811
ENSTRUP00000077462	apoe2	ENSTRUP00000077462	ENSTRUP00000074375	annotation not available	Apolipoprotein E2.	0.670
ENSTRUP00000077462	cetp	ENSTRUP00000077462	ENSTRUP00000070450	annotation not available	Cholesteryl ester transfer protein.	0.656
ENSTRUP00000083202	apoA-IV4	ENSTRUP00000083202	ENSTRUP00000002135	annotation not available	Apolipoprotein A-IV4.	0.546
ENSTRUP00000083202	apoa-i	ENSTRUP00000083202	ENSTRUP00000087291	annotation not available	Uncharacterized protein.	0.512
ENSTRUP00000083202	apoa-iv3	ENSTRUP00000083202	ENSTRUP00000004267	annotation not available	Uncharacterized protein.	0.546
ENSTRUP00000083202	apoe2	ENSTRUP00000083202	ENSTRUP00000074375	annotation not available	Apolipoprotein E2.	0.585
ENSTRUP00000083202	cetp	ENSTRUP00000083202	ENSTRUP00000070450	annotation not available	Cholesteryl ester transfer protein.	0.566
ENSTRUP00000083202	lcat	ENSTRUP00000083202	ENSTRUP00000082709	annotation not available	Lecithin-cholesterol acyltransferase.	0.561
H2RM54_TAKRU	apoA-IV4	ENSTRUP00000001217	ENSTRUP00000002135	Vitellogenin domain-containing protein.	Apolipoprotein A-IV4.	0.836
H2RM54_TAKRU	apoa-i	ENSTRUP00000001217	ENSTRUP00000087291	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.808
H2RM54_TAKRU	apoa-iv3	ENSTRUP00000001217	ENSTRUP00000004267	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.836