STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074266ATP-binding cassette, sub-family C (CFTR/MRP), member 4. (1324 aa)    
Predicted Functional Partners:
ABCC4
Uncharacterized protein.
  
  
 
0.901
abcg2
ATP-binding cassette, sub-family G (WHITE), member 2d.
  
 0.636
KATNAL2
Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.
  
 0.603
ENSTRUP00000070399
Katanin p60 ATPase-containing subunit A-like 2 isoform X1.
  
 0.603
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
      
 0.596
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
  
 
 0.552
abcg8
ATP-binding cassette, sub-family G (WHITE), member 8.
  
 0.532
gopc
Golgi-associated PDZ and coiled-coil motif-containing protein isoform X1.
   
 0.528
abca12
ATP-binding cassette, sub-family A (ABC1), member 12.
  
 0.510
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
  0.500
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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