STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc39a13Solute carrier family 39 member 13. (415 aa)    
Predicted Functional Partners:
slc30a4
Solute carrier family 30 member 4.
   
 0.826
SLC39A11
Solute carrier family 39 member 11.
      
 0.754
slc30a7
Solute carrier family 30 member 7.
   
 0.749
slc30a6
Solute carrier family 30 member 6.
   
 0.704
LOC101064312
Uncharacterized protein.
      
 0.655
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.654
slc30a5
Solute carrier family 30 member 5.
   
 0.611
slc30a1
Uncharacterized protein.
   
 0.610
slc39a9
Solute carrier family 39 member 9.
    
 
 0.571
bms1
BMS1 ribosome biogenesis factor.
      
 0.540
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.