ENSTRUP00000071127 protein (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSTRUP00000071127

Uncharacterized protein. (57 aa)

Predicted Functional Partners:

hspa5

0.692

LOC101062856

0.681

hspa4

0.681

LOC101075949

0.666

HSPA9

0.649

LOC115252364

0.649

sod2

0.610

hspa14

0.601

grpel1

0.586

hspa13

0.571

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000071127	HSPA9	ENSTRUP00000071127	ENSTRUP00000060073	Uncharacterized protein.	Stress-70 protein, mitochondrial.	0.649
ENSTRUP00000071127	LOC101062856	ENSTRUP00000071127	ENSTRUP00000020949	Uncharacterized protein.	Heat shock protein 4a.	0.681
ENSTRUP00000071127	LOC101075949	ENSTRUP00000071127	ENSTRUP00000086583	Uncharacterized protein.	Heat shock protein 4 like.	0.666
ENSTRUP00000071127	LOC115252364	ENSTRUP00000071127	ENSTRUP00000075481	Uncharacterized protein.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.649
ENSTRUP00000071127	grpel1	ENSTRUP00000071127	ENSTRUP00000023448	Uncharacterized protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.586
ENSTRUP00000071127	hspa13	ENSTRUP00000071127	ENSTRUP00000056074	Uncharacterized protein.	Heat shock protein 70 family, member 13.	0.571
ENSTRUP00000071127	hspa14	ENSTRUP00000071127	ENSTRUP00000031813	Uncharacterized protein.	Heat shock protein 14; Belongs to the heat shock protein 70 family.	0.601
ENSTRUP00000071127	hspa4	ENSTRUP00000071127	ENSTRUP00000065715	Uncharacterized protein.	Heat shock protein 4b.	0.681
ENSTRUP00000071127	hspa5	ENSTRUP00000071127	ENSTRUP00000088063	Uncharacterized protein.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.692
ENSTRUP00000071127	sod2	ENSTRUP00000071127	ENSTRUP00000049520	Uncharacterized protein.	Superoxide dismutase 2, mitochondrial.	0.610
HSPA9	ENSTRUP00000071127	ENSTRUP00000060073	ENSTRUP00000071127	Stress-70 protein, mitochondrial.	Uncharacterized protein.	0.649
HSPA9	LOC101062856	ENSTRUP00000060073	ENSTRUP00000020949	Stress-70 protein, mitochondrial.	Heat shock protein 4a.	0.780
HSPA9	LOC101075949	ENSTRUP00000060073	ENSTRUP00000086583	Stress-70 protein, mitochondrial.	Heat shock protein 4 like.	0.820
HSPA9	grpel1	ENSTRUP00000060073	ENSTRUP00000023448	Stress-70 protein, mitochondrial.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.967
HSPA9	hspa13	ENSTRUP00000060073	ENSTRUP00000056074	Stress-70 protein, mitochondrial.	Heat shock protein 70 family, member 13.	0.671
HSPA9	hspa14	ENSTRUP00000060073	ENSTRUP00000031813	Stress-70 protein, mitochondrial.	Heat shock protein 14; Belongs to the heat shock protein 70 family.	0.646
HSPA9	hspa4	ENSTRUP00000060073	ENSTRUP00000065715	Stress-70 protein, mitochondrial.	Heat shock protein 4b.	0.806
HSPA9	hspa5	ENSTRUP00000060073	ENSTRUP00000088063	Stress-70 protein, mitochondrial.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.765
HSPA9	sod2	ENSTRUP00000060073	ENSTRUP00000049520	Stress-70 protein, mitochondrial.	Superoxide dismutase 2, mitochondrial.	0.418
LOC101062856	ENSTRUP00000071127	ENSTRUP00000020949	ENSTRUP00000071127	Heat shock protein 4a.	Uncharacterized protein.	0.681