STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101064651Tetraspanin. (268 aa)    
Predicted Functional Partners:
itgb4
Integrin beta.
    
 0.661
sema3d
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family.
   
  
 0.656
LOC101077597
Platelet endothelial aggregation receptor 1-like.
     
 0.654
sema3e
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.
      
 0.652
LOC101065663
Glutamate receptor, metabotropic 3.
      
 0.646
H2RLI5_TAKRU
Uncharacterized protein.
    
 0.563
itga3
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.563
ENSTRUP00000057743
Uncharacterized protein.
    
 0.563
ENSTRUP00000059060
Integrin alpha-3-like isoform X1.
    
 0.563
ENSTRUP00000051171
Uncharacterized protein.
     
 0.539
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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