STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062518Sister chromatid cohesion protein PDS5 homolog B-like. (1403 aa)    
Predicted Functional Partners:
smc1a
Structural maintenance of chromosomes protein.
   
 0.937
smc3
Structural maintenance of chromosomes protein.
   
 0.936
RBM20
RNA binding motif protein 20.
   
 0.864
LOC101078750
RAD21 cohesin complex component like 1.
   
 0.853
rad21
RAD21 cohesin complex component a.
   
 0.853
LOC101062448
WAPL cohesin release factor b.
   
 0.832
LOC101076637
WAPL cohesin release factor a.
   
 0.832
LOC101062834
Nipped-B protein.
   
 0.818
LOC101076906
Nipped-B protein.
   
 0.818
LOC101067307
Si:ch211-269e2.1.
   
 0.807
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.