STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kat8Ring finger protein 25. (533 aa)    
Predicted Functional Partners:
LOC105417252
Uncharacterized protein.
   
    0.578
ccdc12
Coiled-coil domain containing 12.
      
 0.566
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
      
 0.566
abi2
Abl-interactor 2b.
      
 0.566
ndufs5
NADH:ubiquinone oxidoreductase subunit S5.
      
 0.565
LOC101069170
Ubiquitin-conjugating enzyme E2D 4 (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.548
LOC101070684
Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.548
LOC101078887
Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.548
ENSTRUP00000072036
annotation not available
    
 
 0.548
ube2t
Ubiquitin-conjugating enzyme E2T (putative).
    
 
 0.525
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.