STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pax3Paired box 3b. (552 aa)    
Predicted Functional Partners:
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.710
LOC101071517
SRY-box transcription factor 6.
    
 
 0.667
prdm1
Uncharacterized protein.
    
 
 0.664
ccnb1
Cyclin B1; Belongs to the cyclin family.
      
 0.660
cactin
Cactin.
    
 0.627
timm9
Translocase of inner mitochondrial membrane 9 homolog.
   
 
 0.616
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
 0.606
myog
Myogenin.
   
 
 0.597
myf5
Myogenic factor.
   
 
 0.583
LOC101071427
SRY-box transcription factor 10.
   
 
 0.579
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.