ENSTRUP00000073885 protein (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSTRUP00000073885

Rho-GAP domain-containing protein. (625 aa)

Predicted Functional Partners:

LOC101077791

0.701

rictor

0.574

itsn1

0.573

mlst8

0.559

mapkap1

0.557

LOC101073733

0.483

LOC101067723

0.483

rhou

0.467

rhov

0.467

LOC101070751

0.467

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000073885	LOC101067723	ENSTRUP00000073885	ENSTRUP00000078989	Rho-GAP domain-containing protein.	Cell division cycle 42.	0.483
ENSTRUP00000073885	LOC101070751	ENSTRUP00000073885	ENSTRUP00000076749	Rho-GAP domain-containing protein.	Ras homolog family member Ub.	0.467
ENSTRUP00000073885	LOC101073733	ENSTRUP00000073885	ENSTRUP00000078185	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.483
ENSTRUP00000073885	LOC101077791	ENSTRUP00000073885	ENSTRUP00000080206	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.701
ENSTRUP00000073885	itsn1	ENSTRUP00000073885	ENSTRUP00000071445	Rho-GAP domain-containing protein.	Intersectin 1 (SH3 domain protein).	0.573
ENSTRUP00000073885	mapkap1	ENSTRUP00000073885	ENSTRUP00000003596	Rho-GAP domain-containing protein.	MAPK associated protein 1.	0.557
ENSTRUP00000073885	mlst8	ENSTRUP00000073885	ENSTRUP00000043272	Rho-GAP domain-containing protein.	MTOR associated protein, LST8 homolog (S. cerevisiae).	0.559
ENSTRUP00000073885	rhou	ENSTRUP00000073885	ENSTRUP00000049509	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.467
ENSTRUP00000073885	rhov	ENSTRUP00000073885	ENSTRUP00000063958	Rho-GAP domain-containing protein.	Ras homolog family member V.	0.467
ENSTRUP00000073885	rictor	ENSTRUP00000073885	ENSTRUP00000063007	Rho-GAP domain-containing protein.	RICTOR_N domain-containing protein.	0.574
LOC101067723	ENSTRUP00000073885	ENSTRUP00000078989	ENSTRUP00000073885	Cell division cycle 42.	Rho-GAP domain-containing protein.	0.483
LOC101067723	LOC101070751	ENSTRUP00000078989	ENSTRUP00000076749	Cell division cycle 42.	Ras homolog family member Ub.	0.426
LOC101067723	LOC101077791	ENSTRUP00000078989	ENSTRUP00000080206	Cell division cycle 42.	Uncharacterized protein.	0.989
LOC101067723	itsn1	ENSTRUP00000078989	ENSTRUP00000071445	Cell division cycle 42.	Intersectin 1 (SH3 domain protein).	0.920
LOC101067723	rhou	ENSTRUP00000078989	ENSTRUP00000049509	Cell division cycle 42.	Uncharacterized protein.	0.425
LOC101067723	rhov	ENSTRUP00000078989	ENSTRUP00000063958	Cell division cycle 42.	Ras homolog family member V.	0.433
LOC101070751	ENSTRUP00000073885	ENSTRUP00000076749	ENSTRUP00000073885	Ras homolog family member Ub.	Rho-GAP domain-containing protein.	0.467
LOC101070751	LOC101067723	ENSTRUP00000076749	ENSTRUP00000078989	Ras homolog family member Ub.	Cell division cycle 42.	0.426
LOC101070751	LOC101073733	ENSTRUP00000076749	ENSTRUP00000078185	Ras homolog family member Ub.	Uncharacterized protein.	0.431
LOC101070751	LOC101077791	ENSTRUP00000076749	ENSTRUP00000080206	Ras homolog family member Ub.	Uncharacterized protein.	0.989