STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tarbp1Si:dkey-85a20.4. (1611 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
    0.868
utp20
UTP20 small subunit processome component.
   
    0.860
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.809
gtpbp3
GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
 
 0.803
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.801
mrpl17
Mitochondrial ribosomal protein L17.
  
 
 0.796
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.779
Mrpl21
Uncharacterized protein.
   
   0.772
tbl3
Transducin (beta)-like 3.
   
  
 0.772
pdcd11
Programmed cell death 11.
  
   0.770
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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