STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101066233AN1-type domain-containing protein. (266 aa)    
Predicted Functional Partners:
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.734
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.734
rps27a
Ribosomal protein S27a.
    
 0.591
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.590
rab21
Ras-related protein Rab-21.
   
 
 0.463
zfand4
Zinc finger, AN1-type domain 4.
    
 0.442
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.435
LOC101078557
Uncharacterized protein.
    
 0.435
LOC101074958
Uncharacterized protein.
    
 0.435
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.434
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.