msmo1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

msmo1

Methylsterol monooxygenase 1; Belongs to the sterol desaturase family. (361 aa)

Predicted Functional Partners:

hsd17b7

0.988

nsdhl

0.987

LOC115252790

0.961

Lbr

0.961

tm7sf2

0.961

sc5d

0.960

dhcr24

0.960

sigmar1

0.874

lss

0.870

fdft1

0.862

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC115252790	Lbr	ENSTRUP00000002929	ENSTRUP00000058350	Delta(14)-sterol reductase-like.	Tudor domain-containing protein.	0.902
LOC115252790	dhcr24	ENSTRUP00000002929	ENSTRUP00000041669	Delta(14)-sterol reductase-like.	24-dehydrocholesterol reductase.	0.942
LOC115252790	fdft1	ENSTRUP00000002929	ENSTRUP00000030934	Delta(14)-sterol reductase-like.	Farnesyl-diphosphate farnesyltransferase 1.	0.457
LOC115252790	hsd17b7	ENSTRUP00000002929	ENSTRUP00000046998	Delta(14)-sterol reductase-like.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.818
LOC115252790	lss	ENSTRUP00000002929	ENSTRUP00000033247	Delta(14)-sterol reductase-like.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.527
LOC115252790	msmo1	ENSTRUP00000002929	ENSTRUP00000075931	Delta(14)-sterol reductase-like.	Methylsterol monooxygenase 1; Belongs to the sterol desaturase family.	0.961
LOC115252790	nsdhl	ENSTRUP00000002929	ENSTRUP00000023376	Delta(14)-sterol reductase-like.	NAD(P) dependent steroid dehydrogenase-like; Belongs to the 3-beta-HSD family.	0.637
LOC115252790	sc5d	ENSTRUP00000002929	ENSTRUP00000031519	Delta(14)-sterol reductase-like.	Sterol-C5-desaturase; Belongs to the sterol desaturase family.	0.888
LOC115252790	sigmar1	ENSTRUP00000002929	ENSTRUP00000049523	Delta(14)-sterol reductase-like.	Sigma non-opioid intracellular receptor 1.	0.818
LOC115252790	tm7sf2	ENSTRUP00000002929	ENSTRUP00000076172	Delta(14)-sterol reductase-like.	Transmembrane 7 superfamily member 2.	0.900
Lbr	LOC115252790	ENSTRUP00000058350	ENSTRUP00000002929	Tudor domain-containing protein.	Delta(14)-sterol reductase-like.	0.902
Lbr	dhcr24	ENSTRUP00000058350	ENSTRUP00000041669	Tudor domain-containing protein.	24-dehydrocholesterol reductase.	0.942
Lbr	fdft1	ENSTRUP00000058350	ENSTRUP00000030934	Tudor domain-containing protein.	Farnesyl-diphosphate farnesyltransferase 1.	0.457
Lbr	hsd17b7	ENSTRUP00000058350	ENSTRUP00000046998	Tudor domain-containing protein.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.818
Lbr	lss	ENSTRUP00000058350	ENSTRUP00000033247	Tudor domain-containing protein.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.527
Lbr	msmo1	ENSTRUP00000058350	ENSTRUP00000075931	Tudor domain-containing protein.	Methylsterol monooxygenase 1; Belongs to the sterol desaturase family.	0.961
Lbr	nsdhl	ENSTRUP00000058350	ENSTRUP00000023376	Tudor domain-containing protein.	NAD(P) dependent steroid dehydrogenase-like; Belongs to the 3-beta-HSD family.	0.637
Lbr	sc5d	ENSTRUP00000058350	ENSTRUP00000031519	Tudor domain-containing protein.	Sterol-C5-desaturase; Belongs to the sterol desaturase family.	0.888
Lbr	sigmar1	ENSTRUP00000058350	ENSTRUP00000049523	Tudor domain-containing protein.	Sigma non-opioid intracellular receptor 1.	0.818
Lbr	tm7sf2	ENSTRUP00000058350	ENSTRUP00000076172	Tudor domain-containing protein.	Transmembrane 7 superfamily member 2.	0.902