STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asphd2Aspartate beta-hydroxylase domain containing 2. (377 aa)    
Predicted Functional Partners:
srrd
SRR1 domain containing.
      
 0.587
acbd6
Acyl-CoA binding domain containing 6.
   
  
 0.580
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
      
 0.566
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
      
 0.554
kctd7
Potassium channel tetramerization domain containing 7.
      
 0.545
sez6l2
Seizure related 6 homolog (mouse)-like 2.
 
 
  
 0.529
LOC101079329
Transmembrane protein 53.
      
 0.481
ENSTRUP00000080994
annotation not available
      
 0.481
HPS6
HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.
      
 0.461
H2SE12_TAKRU
Uncharacterized protein.
      
 0.452
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.