mrps18a protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mrps18a

Mitochondrial ribosomal protein S18A. (208 aa)

Predicted Functional Partners:

mrps18c

0.998

Mrps14

0.974

mrps33

0.969

mrps18b

0.966

mrps15

0.966

mrps16

0.965

Mrpl21

0.964

MRPS12

0.963

mrps5

0.962

mrps11

0.960

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MRPS12	Mrpl21	ENSTRUP00000085302	ENSTRUP00000015393	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.994
MRPS12	Mrps14	ENSTRUP00000085302	ENSTRUP00000072565	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	28S ribosomal protein S14, mitochondrial.	0.999
MRPS12	mrps11	ENSTRUP00000085302	ENSTRUP00000049602	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999
MRPS12	mrps15	ENSTRUP00000085302	ENSTRUP00000064740	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.999
MRPS12	mrps16	ENSTRUP00000085302	ENSTRUP00000071946	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S16.	0.999
MRPS12	mrps18a	ENSTRUP00000085302	ENSTRUP00000081435	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S18A.	0.963
MRPS12	mrps18b	ENSTRUP00000085302	ENSTRUP00000036621	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S18B.	0.944
MRPS12	mrps18c	ENSTRUP00000085302	ENSTRUP00000057991	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S18C.	0.975
MRPS12	mrps33	ENSTRUP00000085302	ENSTRUP00000086157	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	Mitochondrial ribosomal protein S33.	0.986
MRPS12	mrps5	ENSTRUP00000085302	ENSTRUP00000078673	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	28S ribosomal protein S5, mitochondrial.	0.998
Mrpl21	MRPS12	ENSTRUP00000015393	ENSTRUP00000085302	Uncharacterized protein.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.994
Mrpl21	Mrps14	ENSTRUP00000015393	ENSTRUP00000072565	Uncharacterized protein.	28S ribosomal protein S14, mitochondrial.	0.993
Mrpl21	mrps11	ENSTRUP00000015393	ENSTRUP00000049602	Uncharacterized protein.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.992
Mrpl21	mrps15	ENSTRUP00000015393	ENSTRUP00000064740	Uncharacterized protein.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.998
Mrpl21	mrps16	ENSTRUP00000015393	ENSTRUP00000071946	Uncharacterized protein.	Mitochondrial ribosomal protein S16.	0.999
Mrpl21	mrps18a	ENSTRUP00000015393	ENSTRUP00000081435	Uncharacterized protein.	Mitochondrial ribosomal protein S18A.	0.964
Mrpl21	mrps18b	ENSTRUP00000015393	ENSTRUP00000036621	Uncharacterized protein.	Mitochondrial ribosomal protein S18B.	0.822
Mrpl21	mrps18c	ENSTRUP00000015393	ENSTRUP00000057991	Uncharacterized protein.	Mitochondrial ribosomal protein S18C.	0.884
Mrpl21	mrps33	ENSTRUP00000015393	ENSTRUP00000086157	Uncharacterized protein.	Mitochondrial ribosomal protein S33.	0.842
Mrpl21	mrps5	ENSTRUP00000015393	ENSTRUP00000078673	Uncharacterized protein.	28S ribosomal protein S5, mitochondrial.	0.995