STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dclre1aDNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (928 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.861
Fancm
ERCC4 domain-containing protein.
   
 0.853
sympk
Symplekin.
   
 0.846
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
   
 0.834
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.834
PAPOLG
Poly(A) polymerase gamma.
    
 0.819
ints4
Integrator complex subunit 4.
   
 0.815
fip1l1
FIP1 like 1b (S. cerevisiae).
    
 0.812
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.805
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.799
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.