STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yme1l1YME1-like 1a. (725 aa)    
Predicted Functional Partners:
ndufa13
NADH:ubiquinone oxidoreductase subunit A13.
   
   0.857
timmdc1
Uncharacterized protein.
   
   0.856
phb2
Prohibitin.
   
 0.783
phb
Prohibitin.
   
 0.781
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
  
  
 0.765
rab18
RAB18A, member RAS oncogene family.
   
  
 0.719
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.684
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.679
stoml1
Stomatin (EPB72)-like 1.
  
 0.671
oma1
OMA1 zinc metallopeptidase.
  
 
 0.669
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (20%) [HD]