STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101069828Serine/threonine kinase 24b (STE20 homolog, yeast). (443 aa)    
Predicted Functional Partners:
pdcd10
Programmed cell death 10b.
    
 
 0.796
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
   
 
 0.791
LOC101078365
MOB family member 4, phocein.
    
 
 0.677
LOC101063238
Striatin interacting protein 1.
    
 
 0.653
H2U387_TAKRU
TAO kinase 3b.
 
  
   0.651
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
   
 
 0.620
LOC101070221
Calcium binding protein 39, like 1.
    
 
 0.616
cab39l
Calcium binding protein 39-like.
    
 
 0.616
cab39
Calcium binding protein 39.
    
 
 0.616
strip2
Striatin interacting protein 2.
    
 
 0.612
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.