STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSTRUP00000082854annotation not available (312 aa)    
Predicted Functional Partners:
brcc3
BRCA1/BRCA2-containing complex, subunit 3.
    
 0.768
babam2
BRISC and BRCA1 A complex member 2.
    
 0.768
babam1
BRISC and BRCA1 A complex member 1.
    
 0.767
brca1
Uncharacterized protein.
    
 0.715
rps27a
Ribosomal protein S27a.
    
  0.660
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.647
bard1
BRCA1 associated RING domain 1.
    
 0.642
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.556
ENSTRUP00000076032
annotation not available
 
     0.522
rpl21
Ribosomal protein L21.
   
   0.493
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.