STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101076637WAPL cohesin release factor a. (1168 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
    0.924
smc3
Structural maintenance of chromosomes protein.
   
 0.924
smc1a
Structural maintenance of chromosomes protein.
   
 0.860
RBM20
RNA binding motif protein 20.
   
 0.849
pds5a
PDS5 cohesin associated factor A.
   
 0.847
LOC101078750
RAD21 cohesin complex component like 1.
    
 0.833
rad21
RAD21 cohesin complex component a.
    
 0.833
H2RSW2_TAKRU
PDS5 cohesin associated factor B.
   
 0.832
LOC101062518
Sister chromatid cohesion protein PDS5 homolog B-like.
   
 0.832
H2V673_TAKRU
Uncharacterized protein.
   
 0.832
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.