KIAA0556 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KIAA0556

KIAA0556. (1588 aa)

Predicted Functional Partners:

katnb1

0.598

cep97

0.565

KATNAL2

0.556

ENSTRUP00000070399

0.556

ift22

0.541

recql5

0.525

ift172

0.522

armc9

0.507

ift88

0.466

wdr35

0.435

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000070399	KATNAL2	ENSTRUP00000070399	ENSTRUP00000006052	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	0.714
ENSTRUP00000070399	KIAA0556	ENSTRUP00000070399	ENSTRUP00000086039	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	KIAA0556.	0.556
ENSTRUP00000070399	katnb1	ENSTRUP00000070399	ENSTRUP00000009183	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.895
KATNAL2	ENSTRUP00000070399	ENSTRUP00000006052	ENSTRUP00000070399	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	0.714
KATNAL2	KIAA0556	ENSTRUP00000006052	ENSTRUP00000086039	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	KIAA0556.	0.556
KATNAL2	katnb1	ENSTRUP00000006052	ENSTRUP00000009183	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.895
KIAA0556	ENSTRUP00000070399	ENSTRUP00000086039	ENSTRUP00000070399	KIAA0556.	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	0.556
KIAA0556	KATNAL2	ENSTRUP00000086039	ENSTRUP00000006052	KIAA0556.	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	0.556
KIAA0556	armc9	ENSTRUP00000086039	ENSTRUP00000019029	KIAA0556.	Armadillo repeat containing 9.	0.507
KIAA0556	cep97	ENSTRUP00000086039	ENSTRUP00000031067	KIAA0556.	Centrosomal protein 97.	0.565
KIAA0556	ift172	ENSTRUP00000086039	ENSTRUP00000059352	KIAA0556.	Uncharacterized protein.	0.522
KIAA0556	ift22	ENSTRUP00000086039	ENSTRUP00000027302	KIAA0556.	Intraflagellar transport 22 homolog (Chlamydomonas).	0.541
KIAA0556	ift88	ENSTRUP00000086039	ENSTRUP00000059293	KIAA0556.	Intraflagellar transport 88 homolog.	0.466
KIAA0556	katnb1	ENSTRUP00000086039	ENSTRUP00000009183	KIAA0556.	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.598
KIAA0556	recql5	ENSTRUP00000086039	ENSTRUP00000020645	KIAA0556.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.525
KIAA0556	wdr35	ENSTRUP00000086039	ENSTRUP00000016240	KIAA0556.	WD repeat-containing protein 35.	0.435
armc9	KIAA0556	ENSTRUP00000019029	ENSTRUP00000086039	Armadillo repeat containing 9.	KIAA0556.	0.507
cep97	KIAA0556	ENSTRUP00000031067	ENSTRUP00000086039	Centrosomal protein 97.	KIAA0556.	0.565
ift172	KIAA0556	ENSTRUP00000059352	ENSTRUP00000086039	Uncharacterized protein.	KIAA0556.	0.522
ift172	ift22	ENSTRUP00000059352	ENSTRUP00000027302	Uncharacterized protein.	Intraflagellar transport 22 homolog (Chlamydomonas).	0.953