STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIOX2Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (464 aa)    
Predicted Functional Partners:
DIP2B
Disco-interacting protein 2 homolog B isoform X1.
      
 0.681
HELZ2
LOW QUALITY PROTEIN: helicase with zinc finger domain 2.
      
 0.675
RPL8
60S ribosomal protein L8.
    
 
 0.670
PGP
Glycerol-3-phosphate phosphatase.
      
 0.600
VPS11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
   
  
 0.533
CMPK1
UMP-CMP kinase; Belongs to the adenylate kinase family.
      
 0.507
SGF29
SAGA-associated factor 29.
      
 0.507
SQOR
Sulfide:quinone oxidoreductase, mitochondrial isoform X1.
      
 0.495
ATP1A3
Sodium/potassium-transporting ATPase subunit alpha.
   
  
 0.445
MFSD10
Major facilitator superfamily domain-containing protein 10.
      
 0.439
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.