TMEM200B protein (Balaenoptera acutorostrata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TMEM200B

Transmembrane protein 200B. (241 aa)

Predicted Functional Partners:

ZBTB39

0.508

CWH43

0.507

CSMD2

0.499

FAM124B

0.497

SLC22A18

0.497

CLSTN3

0.439

BVES

0.439

SLC9A9

0.418

ARNTL2

0.414

VSIG8

0.408

Your Current Organism:

Balaenoptera acutorostrata

NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL2	TMEM200B	A0A383ZKX1	A0A383Z621	Aryl hydrocarbon receptor nuclear translocator-like protein 2 isoform X1.	Transmembrane protein 200B.	0.414
ARNTL2	ZBTB39	A0A383ZKX1	A0A383ZXB1	Aryl hydrocarbon receptor nuclear translocator-like protein 2 isoform X1.	Zinc finger and BTB domain-containing protein 39.	0.475
BVES	TMEM200B	A0A384ATI8	A0A383Z621	Blood vessel epicardial substance isoform X1.	Transmembrane protein 200B.	0.439
CLSTN3	TMEM200B	A0A383Z514	A0A383Z621	Calsyntenin-3.	Transmembrane protein 200B.	0.439
CLSTN3	ZBTB39	A0A383Z514	A0A383ZXB1	Calsyntenin-3.	Zinc finger and BTB domain-containing protein 39.	0.507
CSMD2	CWH43	A0A384A618	A0A384A0I8	CUB and sushi domain-containing protein 2.	LOW QUALITY PROTEIN: PGAP2-interacting protein.	0.418
CSMD2	TMEM200B	A0A384A618	A0A383Z621	CUB and sushi domain-containing protein 2.	Transmembrane protein 200B.	0.499
CSMD2	ZBTB39	A0A384A618	A0A383ZXB1	CUB and sushi domain-containing protein 2.	Zinc finger and BTB domain-containing protein 39.	0.434
CWH43	CSMD2	A0A384A0I8	A0A384A618	LOW QUALITY PROTEIN: PGAP2-interacting protein.	CUB and sushi domain-containing protein 2.	0.418
CWH43	TMEM200B	A0A384A0I8	A0A383Z621	LOW QUALITY PROTEIN: PGAP2-interacting protein.	Transmembrane protein 200B.	0.507
CWH43	ZBTB39	A0A384A0I8	A0A383ZXB1	LOW QUALITY PROTEIN: PGAP2-interacting protein.	Zinc finger and BTB domain-containing protein 39.	0.438
FAM124B	TMEM200B	A0A383YVS3	A0A383Z621	Protein FAM124B.	Transmembrane protein 200B.	0.497
FAM124B	VSIG8	A0A383YVS3	A0A383ZA65	Protein FAM124B.	V-set and immunoglobulin domain-containing protein 8.	0.418
SLC22A18	TMEM200B	A0A383Z7K6	A0A383Z621	Solute carrier family 22 member 18 isoform X1.	Transmembrane protein 200B.	0.497
SLC22A18	ZBTB39	A0A383Z7K6	A0A383ZXB1	Solute carrier family 22 member 18 isoform X1.	Zinc finger and BTB domain-containing protein 39.	0.438
SLC9A9	TMEM200B	A0A384AL99	A0A383Z621	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	Transmembrane protein 200B.	0.418
TMEM200B	ARNTL2	A0A383Z621	A0A383ZKX1	Transmembrane protein 200B.	Aryl hydrocarbon receptor nuclear translocator-like protein 2 isoform X1.	0.414
TMEM200B	BVES	A0A383Z621	A0A384ATI8	Transmembrane protein 200B.	Blood vessel epicardial substance isoform X1.	0.439
TMEM200B	CLSTN3	A0A383Z621	A0A383Z514	Transmembrane protein 200B.	Calsyntenin-3.	0.439
TMEM200B	CSMD2	A0A383Z621	A0A384A618	Transmembrane protein 200B.	CUB and sushi domain-containing protein 2.	0.499